USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: P62249 USC-OGP 2-DE database:  P62249 P62249 General information about the entry View entry in simple text format Entry name RS16_HUMAN Primary accession number P62249 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=40S ribosomal protein S16; AltName: Full=Small ribosomal subunit protein uS9 {ECO:0000303|PubMed:24524803};. Gene name Name=RPS16 Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1331: pI=5.13; Mw=16684 SPOT OGP-1359: pI=5.15; Mw=12450 Cross-references UniProtKB/Swiss-Prot P62249; RS16_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name RS16_HUMAN Primary accession number P62249 Secondary accession number(s) B2RDD5 P17008 Sequence was last modified on  January 23, 2007 (version 2) Annotations were last modified on  March 15, 2017 (version 129) Name and origin of the protein Description RecName: Full=40S ribosomal protein S16; AltName: Full=Small ribosomal subunit protein uS9 {ECO:0000303|PubMed:24524803}; Gene name Name=RPS16 Encoded on Name=RPS16 Keywords 3D-structure; Complete proteome; Direct protein sequencing; Reference proteome; Ribonucleoprotein; Ribosomal protein. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL M60854; AAA60583.1; -; mRNA EMBL AB061841; BAB79479.1; -; Genomic_DNA EMBL AK315498; BAG37882.1; -; mRNA EMBL CH471126; EAW56894.1; -; Genomic_DNA EMBL BC004324; AAH04324.1; -; mRNA EMBL BC007977; AAH07977.1; -; mRNA CCDS CCDS12535.1; -; . PIR A39760; R3HU16; . RefSeq NP_001011.1; NM_001020.5; . UniGene Hs.397609; -; . PDB 4UG0; EM; -; SQ=1-146 PDB 4V6X; EM; 5.00 A; AQ=1-146 PDB 5A2Q; EM; 3.90 A; Q=1-146 PDB 5AJ0; EM; 3.50 A; BQ=1-146 PDB 5FLX; EM; 3.90 A; Q=1-146 PDB 5T2C; EM; 3.60 A; Ay=1-146 PDBsum 4UG0; -; . PDBsum 4V6X; -; . PDBsum 5A2Q; -; . PDBsum 5AJ0; -; . PDBsum 5FLX; -; . PDBsum 5T2C; -; . ProteinModelPortal P62249; -; . SMR P62249; -; . BioGrid 112131; 190; . DIP DIP-33200N; -; . IntAct P62249; 43; . MINT MINT-5001167; -; . STRING 9606.ENSP00000251453; -; . iPTMnet P62249; -; . PhosphoSitePlus P62249; -; . SwissPalm P62249; -; . BioMuta RPS16; -; . DMDM 50403607; -; . EPD P62249; -; . MaxQB P62249; -; . PaxDb P62249; -; . PeptideAtlas P62249; -; . PRIDE P62249; -; . TopDownProteomics P62249; -; . DNASU 6217; -; . Ensembl ENST00000251453; ENSP00000251453; ENSG00000105193; . GeneID 6217; -; . KEGG hsa:6217; -; . UCSC uc002olk.4; human; . CTD 6217; -; . DisGeNET 6217; -; . GeneCards RPS16; -; . H-InvDB HIX0212796; -; . HGNC HGNC:10396; RPS16; . HPA HPA064222; -; . MIM 603675; gene; . neXtProt NX_P62249; -; . OpenTargets ENSG00000105193; -; . PharmGKB PA34796; -; . eggNOG KOG1753; Eukaryota; . eggNOG COG0103; LUCA; . GeneTree ENSGT00390000013067; -; . HOGENOM HOG000019803; -; . HOVERGEN HBG055171; -; . InParanoid P62249; -; . KO K02960; -; . OMA FMGQAEA; -; . PhylomeDB P62249; -; . TreeFam TF300088; -; . Reactome R-HSA-156827; L13a-mediated translational silencing of Ceruloplasmin expression; . Reactome R-HSA-156902; Peptide chain elongation; . Reactome R-HSA-1799339; SRP-dependent cotranslational protein targeting to membrane; . Reactome R-HSA-192823; Viral mRNA Translation; . Reactome R-HSA-2408557; Selenocysteine synthesis; . Reactome R-HSA-6791226; Major pathway of rRNA processing in the nucleolus and cytosol; . Reactome R-HSA-72649; Translation initiation complex formation; . Reactome R-HSA-72689; Formation of a pool of free 40S subunits; . Reactome R-HSA-72695; Formation of the ternary complex; and subsequently; the 43S complex Reactome R-HSA-72702; Ribosomal scanning and start codon recognition; . Reactome R-HSA-72706; GTP hydrolysis and joining of the 60S ribosomal subunit; . Reactome R-HSA-72764; Eukaryotic Translation Termination; . Reactome R-HSA-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC); . Reactome R-HSA-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC); . ChiTaRS RPS16; human; . GeneWiki RPS16; -; . GenomeRNAi 6217; -; . PRO PR:P62249; -; . Proteomes UP000005640; Chromosome 19; . Bgee ENSG00000105193; -; . CleanEx HS_RPS16; -; . ExpressionAtlas P62249; baseline and differential; . Genevisible P62249; HS; . GO GO:0005829; C:cytosol; TAS:Reactome; . GO GO:0022627; C:cytosolic small ribosomal subunit; IDA:UniProtKB; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0031012; C:extracellular matrix; IDA:BHF-UCL; . GO GO:0005925; C:focal adhesion; IDA:UniProtKB; . GO GO:0016020; C:membrane; IDA:UniProtKB; . GO GO:0005654; C:nucleoplasm; TAS:Reactome; . GO GO:0015935; C:small ribosomal subunit; IDA:UniProtKB; . GO GO:0003723; F:RNA binding; IDA:UniProtKB; . GO GO:0003735; F:structural constituent of ribosome; IBA:GO_Central; . GO GO:0097421; P:liver regeneration; IEA:Ensembl; . GO GO:0000462; P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA; 5.8S rRNA; LSU-rRNA) IBA:GO_Central . GO GO:0000184; P:nuclear-transcribed mRNA catabolic process; nonsense-mediated decay; TAS:Reactome GO GO:0042274; P:ribosomal small subunit biogenesis; IMP:UniProtKB; . GO GO:0006364; P:rRNA processing; IMP:UniProtKB; . GO GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome; . GO GO:0006412; P:translation; NAS:UniProtKB; . GO GO:0006413; P:translational initiation; TAS:Reactome; . GO GO:0019083; P:viral transcription; TAS:Reactome; . Gene3D 3.30.230.10; -; 1; . InterPro IPR020568; Ribosomal_S5_D2-typ_fold; . InterPro IPR014721; Ribosomal_S5_D2-typ_fold_subgr; . InterPro IPR000754; Ribosomal_S9; . InterPro IPR020574; Ribosomal_S9_CS; . PANTHER PTHR21569; PTHR21569; 1; . Pfam PF00380; Ribosomal_S9; 1; . SUPFAM SSF54211; SSF54211; 1; . PROSITE PS00360; RIBOSOMAL_S9; 1; .

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